Class: Food

name: Food
id_prefixes:
- mifc
description: Metadata about foods analyzed for components of nutritional interest.
in_subset:
- RecommendedSubset
from_schema: https://w3id.org/kaiiam/mifc
is_a: NamedThing
slots:
- food_sample_id
- food_description_label
- food_primary_type
- food_primary_type_label
- food_primary_type_scientific_name
- food_primary_type_cultivar_name
- food_primary_type_animal_breed_name
- food_primary_type_ncbi_taxon_id
- food_description_match_type
- food_upc_code
- food_preservation_state
- food_storage_temperature_state
- food_ripeness_state
- food_cooking_method
- food_origin_country
- food_acquisition_city
- food_acquisition_country
- food_acquisition_country_subdivision
- food_acquisition_date
- food_acquisition_year
- food_acquisition_location_type
- food_acquisition_location_name
- food_acquisition_latitude
- food_acquisition_longitude
- food_acquisition_agent_name
- food_acquisition_organization
- food_distributor_city
- food_distributor_country
- food_distributor_country_subdivision
- food_expiration_date
- food_sell_by_date
- food_category_label
- food_category_type
- food_additional_types
- food_laboratory_sample_id
- food_laboratory_sample_aliquot_id
- food_laboratory_sample_batch_id
- food_brand_name
- food_lot_number
- food_label_weight
- food_label_weight_unit
- food_sample_publication_date
- food_comment
class_uri: schema:Food

name: Food
id_prefixes:
- mifc
description: Metadata about foods analyzed for components of nutritional interest.
in_subset:
- RecommendedSubset
from_schema: https://w3id.org/kaiiam/mifc
is_a: NamedThing
attributes:
  food_sample_id:
    name: food_sample_id
    description: A string denoting the primary identifier for a sample of the class
      Food. Note that food_sample_id should be unique in a given dataset and should
      be used to relate Food and Component records via component_sample_id from the
      Component class.
    comments:
    - 'Instead of `identifier: true` perhaps we can use unique_keys https://linkml.io/linkml/schemas/constraints.html'
    examples:
    - value: CY121UM
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_sample_id
    owner: Food
    domain_of:
    - Food
    range: string
    required: true
  food_description_label:
    name: food_description_label
    description: A string clearly and unambiguous describing the sampled primary food
      material, in accordance with globally accepted guidelines for the description
      of foods.
    comments:
    - 'For reference see book by Greenfield and Southgate ''Food Composition Data:
      Production Management and Use'' ISBN-10 9251049491 and cited literature'
    examples:
    - value: Yam, raw
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_description_label
    owner: Food
    domain_of:
    - Food
    range: string
    required: true
  food_primary_type:
    name: food_primary_type
    description: A controlled vocabulary term representing the primary food material
      which was sampled.
    comments:
    - The food_primary_type could be sourced from one of various food vocabularies
      such as USDA's FDC vocabulary, FoodEx2, LanguaL, or FoodOn.
    examples:
    - value: FOODON:03311865
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    exact_mappings:
    - FDC:NDB_number
    rank: 1000
    slot_uri: schema:name
    alias: food_primary_type
    owner: Food
    domain_of:
    - Food
    range: string
    recommended: true
  food_primary_type_label:
    name: food_primary_type_label
    description: A string denoting the label of a controlled vocabulary term representing
      the primary food material which was sampled.
    comments:
    - This field is to be used only for the string labels of from controlled vocabulary
      terms which are mapped to the food_description_label.
    examples:
    - value: piece of chicken (raw)
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    close_mappings:
    - PTFI:Specimen_Food_Product_Name
    rank: 1000
    alias: food_primary_type_label
    owner: Food
    domain_of:
    - Food
    range: string
    recommended: true
  food_primary_type_scientific_name:
    name: food_primary_type_scientific_name
    description: A string denoting the scientific name, (in binomial nomenclature)
      of an organism that a food material is primarily composed of.
    comments:
    - This slot should only be used in cases where food materials are single ingredient
      foods or have a limited number of additives e.g. "salted Nori seaweed" or "filleted
      anchovies canned in oil".
    examples:
    - value: Gallus gallus
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_primary_type_scientific_name
    owner: Food
    domain_of:
    - Food
    range: string
  food_primary_type_cultivar_name:
    name: food_primary_type_cultivar_name
    description: A string denoting the cultivar name of the primary food material.
    examples:
    - value: Adirondack Blue
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_primary_type_cultivar_name
    owner: Food
    domain_of:
    - Food
    range: string
  food_primary_type_animal_breed_name:
    name: food_primary_type_animal_breed_name
    description: A string denoting the breed name of the primary food material.
    comments:
    - This slot should only be used in cases where food material is an animal with
      a recognizable breed name that is managed by a national breed registry, breed
      association, or similar organization. E.g., "Wagyu" for the Wagu cattle breed.
    examples:
    - value: Wagyu
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_primary_type_animal_breed_name
    owner: Food
    domain_of:
    - Food
    range: string
  food_primary_type_ncbi_taxon_id:
    name: food_primary_type_ncbi_taxon_id
    description: A curie from the ontology representation of the NCBI organismal taxonomy
      (NCBITaxon) describing the taxonomic identifier of the primary food material.
    comments:
    - To do specify an NCBITaxon curie as the range for the slot.
    examples:
    - value: NCBITaxon:9031
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_primary_type_ncbi_taxon_id
    owner: Food
    domain_of:
    - Food
    range: string
  food_description_match_type:
    name: food_description_match_type
    description: A value from a controlled vocabulary term representing the type of
      mapping between the food_description_label and food_primary_type_label.
    comments:
    - Note that the subject is the food_description_label and the object is food_primary_type_label
    - See https://github.com/mapping-commons/sssom/blob/master/src/sssom_schema/schema/sssom_schema.yaml
    examples:
    - value: skos:exactMatch
      description: Mappings assessed to indicate a high degree of confidence that
        the concepts expressed in the subject and object terms can be used interchangeably.
        In SKOS this is described as following the transitive property.
    - value: skos:closeMatch
      description: Mappings between the subject and object terms that convey a high
        degree of similarity, but are not exactly the same or interchangeable.
    - value: skos:broadMatch
      description: Mappings between a subject and object terms, where the object term
        is above the subject within a concept hierarchy.
    - value: skos:narrowMatch
      description: Mappings between a subject and object terms, where the object term
        that is below the subject within a concept hierarchy.
    - value: skos:relatedMatch
      description: Mappings between subject and object terms that might have some
        association but are not clearly not referring to the the same or similar concepts.
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_description_match_type
    owner: Food
    domain_of:
    - Food
    range: SkosMatchType
    recommended: true
  food_upc_code:
    name: food_upc_code
    description: An string denoting a Universal Product Code (UPC) barcode of a food
      sample.
    examples:
    - value: '40822011143'
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_upc_code
    owner: Food
    domain_of:
    - Food
    range: string
  food_preservation_state:
    name: food_preservation_state
    description: One or multiple values from an enumerated set of controlled vocabulary
      terms representing the preservation state(s) of a food sample.
    examples:
    - value: '[raw]'
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_preservation_state
    owner: Food
    domain_of:
    - Food
    range: FoodPreservationState
    recommended: true
    multivalued: true
  food_storage_temperature_state:
    name: food_storage_temperature_state
    description: One or multiple values from an enumerated set of controlled vocabulary
      terms representing the qualitative temperature state at which a food sample
      was stored prior to acquisition.
    examples:
    - value: '[frozen]'
    - value: '[frozen|refrigerated]'
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_storage_temperature_state
    owner: Food
    domain_of:
    - Food
    range: FoodStorageTemperatureState
    recommended: true
    multivalued: true
  food_ripeness_state:
    name: food_ripeness_state
    description: A value from a enumerated set of controlled vocabulary terms representing
      the qualitative freshness state of a food sample when prepared for analysis.
    examples:
    - value: unripe
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_ripeness_state
    owner: Food
    domain_of:
    - Food
    range: FoodRipenessState
  food_cooking_method:
    name: food_cooking_method
    description: One or multiple values from an enumerated set of controlled vocabulary
      terms representing the any cooking method(s) applied to a food sample prior
      to analysis.
    examples:
    - value: '[boiled|steamed]'
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_cooking_method
    owner: Food
    domain_of:
    - Food
    range: FoodCookingMethod
    recommended: true
    multivalued: true
  food_origin_country:
    name: food_origin_country
    description: A value from an enumerated set of controlled vocabulary terms denoting
      denoting the country code from which a food sample originates.
    examples:
    - value: AFG
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_origin_country
    owner: Food
    domain_of:
    - Food
    range: CountryCode
  food_acquisition_city:
    name: food_acquisition_city
    description: A string denoting the city in which a food sample was acquired.
    examples:
    - value: Tucson
    from_schema: https://w3id.org/kaiiam/mifc
    close_mappings:
    - PTFI:Collection_Location
    rank: 1000
    alias: food_acquisition_city
    owner: Food
    domain_of:
    - Food
    range: string
  food_acquisition_country:
    name: food_acquisition_country
    description: A value from an enumerated set of controlled vocabulary terms denoting
      denoting the country code from which a food sample was acquired.
    examples:
    - value: AFG
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_acquisition_country
    owner: Food
    domain_of:
    - Food
    range: CountryCode
    recommended: true
  food_acquisition_country_subdivision:
    name: food_acquisition_country_subdivision
    description: A string denoting the country subdivision (state or province) from
      which a food sample was acquired.
    examples:
    - value: PA
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_acquisition_country_subdivision
    owner: Food
    domain_of:
    - Food
    range: string
  food_acquisition_date:
    name: food_acquisition_date
    description: A date value representing the date a food sample was acquired.
    examples:
    - value: '2023-03-08'
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    exact_mappings:
    - PTFI:Collection_Date
    rank: 1000
    alias: food_acquisition_date
    owner: Food
    domain_of:
    - Food
    range: date
    recommended: true
  food_acquisition_year:
    name: food_acquisition_year
    description: A string value representing the year a food sample was acquired.
    comments:
    - When possible food_acquisition_date should be used instead of food_acquisition_date_year.
    examples:
    - value: '2011'
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_acquisition_year
    owner: Food
    domain_of:
    - Food
    range: string
  food_acquisition_location_type:
    name: food_acquisition_location_type
    description: A value from an enumerated set of controlled vocabulary terms describing
      the type of location from which a food sample was acquired.
    examples:
    - value: supermarket
    in_subset:
    - RecommendedSubset
    from_schema: https://w3id.org/kaiiam/mifc
    exact_mappings:
    - PTFI:Collection_Type
    rank: 1000
    alias: food_acquisition_location_type
    owner: Food
    domain_of:
    - Food
    range: FoodAcquisitionLocationType
    recommended: true
  food_acquisition_location_name:
    name: food_acquisition_location_name
    description: A string describing the name of the location from which a food sample
      was acquired.
    examples:
    - value: Safeway
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_acquisition_location_name
    owner: Food
    domain_of:
    - Food
    range: string
  food_acquisition_latitude:
    name: food_acquisition_latitude
    description: A float representing the latitude of the place from which the food
      sample was acquired.
    examples:
    - value: '25.761681'
    from_schema: https://w3id.org/kaiiam/mifc
    exact_mappings:
    - PTFI:Collection_Latitude
    rank: 1000
    alias: food_acquisition_latitude
    owner: Food
    domain_of:
    - Food
    range: float
  food_acquisition_longitude:
    name: food_acquisition_longitude
    description: A float representing the longitude of the place from which the food
      sample was acquired.
    examples:
    - value: '-80.191788'
    from_schema: https://w3id.org/kaiiam/mifc
    exact_mappings:
    - PTFI:Collection_Longitude
    rank: 1000
    alias: food_acquisition_longitude
    owner: Food
    domain_of:
    - Food
    range: float
  food_acquisition_agent_name:
    name: food_acquisition_agent_name
    description: A string denoting the name of the agent (person, device or other
      type of service) that acquired the food sample.
    examples:
    - value: Denise Trainer
    from_schema: https://w3id.org/kaiiam/mifc
    exact_mappings:
    - PTFI:Collector_Name
    rank: 1000
    alias: food_acquisition_agent_name
    owner: Food
    domain_of:
    - Food
    range: string
  food_acquisition_organization:
    name: food_acquisition_organization
    description: A string denoting the name of the organization responsible for acquired
      the food sample.
    examples:
    - value: USDA Food for Health of People and the Environment Laboratory
    from_schema: https://w3id.org/kaiiam/mifc
    exact_mappings:
    - PTFI:Collector_Organization
    rank: 1000
    alias: food_acquisition_organization
    owner: Food
    domain_of:
    - Food
    range: string
  food_distributor_city:
    name: food_distributor_city
    description: A string denoting the city of a distributor organization from which
      a food sample was acquired.
    examples:
    - value: Veracruz
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_distributor_city
    owner: Food
    domain_of:
    - Food
    range: string
  food_distributor_country:
    name: food_distributor_country
    description: A value from an enumerated set of controlled vocabulary terms denoting
      denoting the country code of a distributor organization from which a food sample
      was acquired.
    examples:
    - value: AFG
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_distributor_country
    owner: Food
    domain_of:
    - Food
    range: CountryCode
  food_distributor_country_subdivision:
    name: food_distributor_country_subdivision
    description: A string denoting the country subdivision (state or province) of
      a distributor organization from which a food sample was acquired.
    comments:
    - To be determined if state codes should be specified over full names of states/provinces
      for countries globally.
    examples:
    - value: Ohio
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_distributor_country_subdivision
    owner: Food
    domain_of:
    - Food
    range: string
  food_expiration_date:
    name: food_expiration_date
    description: A date value representing the food expiration data as shown on the
      labeling information of the food sample.
    examples:
    - value: '2023-03-08'
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_expiration_date
    owner: Food
    domain_of:
    - Food
    range: date
  food_sell_by_date:
    name: food_sell_by_date
    description: A date value representing a date that indicates to stores how long
      to display a food product for sale for inventory management purposes.
    comments:
    - Definition sourced from https://www.fsis.usda.gov/food-safety/safe-food-handling-and-preparation/food-safety-basics/food-product-dating.
    examples:
    - value: '2023-03-08'
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_sell_by_date
    owner: Food
    domain_of:
    - Food
    range: date
  food_category_label:
    name: food_category_label
    description: A string or controlled vocabulary denoting the label of the food
      group or category of the primary food material.
    examples:
    - value: Beverages
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_category_label
    owner: Food
    domain_of:
    - Food
    range: string
  food_category_type:
    name: food_category_type
    description: A controlled vocabulary term representing the category of the food
      material that was sampled.
    examples:
    - value: FOOD:1400
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_category_type
    owner: Food
    domain_of:
    - Food
    range: string
  food_additional_types:
    name: food_additional_types
    description: A list of controlled vocabulary denoting the label(s) of additional
      food types, not including the food_primary_type that are in a food sample.
    examples:
    - value: '[wheat flour (enriched)|syrup|water|salt]'
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_additional_types
    owner: Food
    domain_of:
    - Food
    range: string
    multivalued: true
  food_laboratory_sample_id:
    name: food_laboratory_sample_id
    description: A string denoting an identifier of a laboratory sample which was
      prepared from a food sample.
    comments:
    - Only use this attribute if a separate ID is assigned to laboratory samples derived
      from food samples. Otherwise just use the food_sample_id.
    examples:
    - value: CY124YB_1
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_laboratory_sample_id
    owner: Food
    domain_of:
    - Food
    - Component
    range: string
  food_laboratory_sample_aliquot_id:
    name: food_laboratory_sample_aliquot_id
    description: A string denoting an identifier of a unique aliquot of a food laboratory
      sample which was prepared from a food sample.
    comments:
    - Only use this attribute if identifiers are assigned to aliquots/sub-samples
      of food laboratory samples denoted by their food_laboratory_sample_id.
    examples:
    - value: NFY122P11
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_laboratory_sample_aliquot_id
    owner: Food
    domain_of:
    - Food
    - Component
    range: string
  food_laboratory_sample_batch_id:
    name: food_laboratory_sample_batch_id
    description: A string denoting an identifier of a batch of laboratory samples
      analysed together.
    examples:
    - value: t
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_laboratory_sample_batch_id
    owner: Food
    domain_of:
    - Food
    - Component
    range: string
  food_brand_name:
    name: food_brand_name
    description: A string denoting a name identifying a product, service, or organization
      selling and or distributing the primary food material.
    examples:
    - value: Bob's Red Mill
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_brand_name
    owner: Food
    domain_of:
    - Food
    range: string
  food_lot_number:
    name: food_lot_number
    description: A string denoting the identifying lot number number assigned by a
      manufacturer to a particular quantity, (or lot) of the sampled primary food
      material.
    comments:
    - A lot number can also be referred to as lot code.
    examples:
    - value: '9500'
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_lot_number
    owner: Food
    domain_of:
    - Food
    range: string
  food_label_weight:
    name: food_label_weight
    description: A float denoting the mass, (or weight on earth) as specified on the
      product label of a sampled primary food material.
    comments:
    - This field should be used in along with food_acquisition_label_weight_unit to
      express the units the food_label_weight was measured.
    examples:
    - value: '24'
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_label_weight
    owner: Food
    domain_of:
    - Food
    range: string
  food_label_weight_unit:
    name: food_label_weight_unit
    description: A unit code representing the unit of measurement in which a food_label_weight
      is measured.
    examples:
    - value: '[oz_av]'
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_label_weight_unit
    owner: Food
    domain_of:
    - Food
    range: string
  food_sample_publication_date:
    name: food_sample_publication_date
    description: A date value representing the date in which a food sample was published.
    examples:
    - value: '2020-10-30'
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_sample_publication_date
    owner: Food
    domain_of:
    - Food
    range: string
  food_comment:
    name: food_comment
    description: A string representing a comment relating to a food sample.
    examples:
    - value: Bananas where green at time of sampling and yellow at the time of analysis.
    from_schema: https://w3id.org/kaiiam/mifc
    rank: 1000
    alias: food_comment
    owner: Food
    domain_of:
    - Food
    range: string
class_uri: schema:Food